Publications

2011

  • Jansson A. Kinetic proofreading and the search for nonself-peptides. Self/Nonself 2011, 2:1.

2010

  • Verma D, Eriksson P, Sahdo B, Persson A, Ejdebäck M, Särndahl E, Söderkvist P. Two adult siblings with atypical cryopyrin-associated periodic syndrome due to a novel M299V mutation in NLRP3. Arthritis Rheum. 2010. 62:2138-43.
  • Jacobsson G, Colque-Navarro P, Gustafsson E, Andersson R, Möllby R. Antibody responses in patients with invasive Staphylococcus aureus infections. Eur J Clin Microbiol Infect Dis. 2010 29:715-25
  • Karlsson D. Studies on emergence and spread of antibiotic resistant Streptococcus pneumonia. PhD Thesis
  • Jansson A. A mathematical framework for analyzing T cell receptor scanning of peptides. Biophys J 2010; 99:2717-25
  • Jansson A, and Jirstrand M. Biochemical modeling with Systems Biology Graphical Notation. Drug Discov Today. 2010. 15:365.
    Karlsson D. Probabilistic network modelling of the impact of penicillin consumption on spread of pneumococci. Epidemiol Infect. 2010 15:1-10.

2009

  • Gustafsson E, Karlsson S, Oscarsson J, Sögård P, Nilsson P, Arvidson S. Mathematical modelling of the regulation of spa (protein A) transcription in Staphylococcus aureus. Int J Med Microbiol
  • Gustafsson E, Jacobsson G, Nilsson P, Enroth H, Beronius MK, Andersson R, Arvidson S. Invasive Staphylococcus aureus strains are highly variable in PFGE patterns, agr group and exoprotein production. Scand J Infect Dis. 2009;41:577-83.
  • Holmén J, Jansson A, Larsson D. A kinetic overview of the receptors involved in 1,25-dihydroxyvitamin D3 and 24,25-dihydroxyvitamin D3 signaling: A system biology approach. Crit Rev Eukaryot Gene Exp. 2009, 19:181  
  • Gustafsson E. Studies on regulatory networks governing virulence gene transcription in Staphylococcus aureus. PhD Thesis


2008

  • Gustafsson E, Karlsson S, Oscarsson J, Sögård P, Nilsson P, Arvidson S. (2008) Mathematical modelling of the regulation of spa (protein A) transcription in Staphylococcus aureus. Int J Med Microbiol.
  • Gustafsson E, Oscarsson J. (2008) Maximal transcription of aur (aureolysin) and sspA (serine protease) in Staphylococcus aureus requires staphylococcal accessory regulator R (sarR) activity. FEMS Microbiol Lett. 284(2):158-64.
  • Jacobsson G, Gustafsson E, Andersson R. (2008) Outcome for invasive Staphylococcus aureus infections. Eur J Clin Microbiol Infect Dis. 2008 In press.
  • Karlsson D, Jansson A, Normark BH, Nilsson P. (2008) An individual-based network model to evaluate interventions for controlling pneumococcal transmission. BMC Infect Dis. 17;8:83.
  • Synnergren J, Adak S, Englund MC, Giesler TL, Noaksson K, Lindahl A, Nilsson P, Nelson D, Abbot S, Olsson B, Sartipy P. (2008) Cardiomyogenic gene expression profiling of differentiating human embryonic stem cells. J Biotechnol. 20;134(1-2):162-70. Epub 2007 Dec 14.
  • Fagerlind M. Mathematical modelling of bacterial quorum sensing and biofilm formation. PhD Thesis
    2007
  • Jansson A, Harlen M, Karlsson S, Nilsson P, Cooley M. (2007) 3D computation modelling of the influence of cytokine secretion on Th-cell development suggests that negative selection (inhibition of Th1 cells) is more effective than positive selection by IL-4 for Th2 cell dominance. Immunol Cell Biol. 85(3):189-96.
  • Karim S, Aronsson H, Ericson H, Pirhonen M, Leyman B, Welin B, Mäntylä E, Palva ET, Van Dijck P, Holmström KO. (2007) Improved drought tolerance without undesired side effects in transgenic plants producing trehalose. Plant Mol Biol. 371-86.
  • Karim S, Holmström KO, Mandal A, Dahl P, Hohmann S, Brader G, Palva ET, Pirhonen M. (2007) AtPTR3, a wound-induced peptide transporter needed for defence against virulent bacterial pathogens in Arabidopsis. Planta. 225(6):1431-45.
  • Synnergren J, Giesler TL, Adak S, Tandon R, Noaksson K, Lindahl A, Nilsson P, Nelson D, Olsson B, Englund MC, Abbot S, Sartipy P. (2007) Differentiating human embryonic stem cells express a unique housekeeping gene signature. Stem Cells. 25(2):473-80.
  • Jansson A. Modelling T helper cell activation and development. PhD Thesis

2006

  • Backhaus, E., Berg, S., Trollfors, B., Andersson, R., Persson, E., Claesson, B. E., Larsson, P., Ek, E., Jonsson, L., Rådberg, G., Johansson, S., Ripa, T., Karlsson, D. and Andersson, K. (2006) Antimicrobial susceptibility of invasive pneumococcal isolates from southwest Sweden 1998-2001. Scand J Infect Dis. 39(1):19-27.
  • Jansson, A., Fagerlind, M., Karlsson, D., Nilsson, P., Cooley, M. (2006) In silico simulations suggest that Th-cell development is regulated by both selective and instructive mechanisms. Immunol Cell Biol. 84, 218-226.
  • Karlsson, D., Karlsson, S., Gustafsson, E., Henriques Normark, B. and Nilsson, P. (2006) Modeling the regulation of the competence-evoking quorum sensing network in Streptococcus pneumoniae. Biosystems. 90(1):211-23.
  • Tomenius, H., Pernestig, A.K., Jonas, K., Georgellis, D., Mollby, R., Normark, S and Melefors Ö. (2006). The Escherichia coli BarA-UvrY two-component system is a virulence determinant in the urinary tract. BMC Microbiology 10(6), 27.

2005


  • Fagerlind MG, Nilsson P, Harlén M, Karlsson S, Rice SA, Kjelleberg S. Modeling the effect of acylated homoserine lactone antagonists in Pseudomonas aeruginosa. Biosystems. 80(2):201-13.
  • Jansson A, Barnes E, Klenerman P, Harlén M, Sørensen P, Davis SJ, Nilsson P. (2005) A theoretical framework for quantitative analysis of the molecular basis of costimulation. J Immunol. 1;175(3):1575-85.
  • Karim S, Lundh D, Holmström KO, Mandal A, Pirhonen M. (2005) Structural and functional characterization of AtPTR3, a stress-induced peptide transporter of Arabidopsis. J Mol Model. 11(3):226-36.
  • Ritchie AJ, Jansson A, Stallberg J, Nilsson P, Lysaght P, Cooley MA. (2005) The Pseudomonas aeruginosa quorum-sensing molecule N-3-(oxododecanoyl)-L-homoserine lactone inhibits T-cell differentiation and cytokine production by a mechanism involving an early step in T-cell activation. Infect Immun. 73(3):1648-55.
  • Sögård P, Harlén M, Svensson LT, Zierath JR, Nilsson P. (2005) Integration of mathematical and experimental approaches to resolve insulin signalling. Acta Physiol Scand. 183(1):125-6.
  • Tomenius H, Pernestig AK, Méndez-Catalá CF, Georgellis D, Normark S, Melefors O. (2005) Genetic and functional characterization of the Escherichia coli BarA-UvrY two-component system: point mutations in the HAMP linker of the BarA sensor give a dominant-negative phenotype. J Bacteriol. 87(21):7317-24.
  • Svensson M, Lundh D, Bergman P and Mandal A. (2005) Characterisation of a T-DNA tagged gene of Arabidopsis thaliana that regulates gibberellin metabolism and flowering time. Functional Plant Biology, 32, 923-932.
     

Uppdaterad: 2011-05-10